storage

package
v0.0.0-...-1ecd636 Latest Latest
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 Go to latest Published: Jan 17, 2026 License: BSD-2-Clause Imports: 12 Imported by: 0

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Variables

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Functions

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Types

type FeatureAnnotationStorage 

type FeatureAnnotationStorage interface {
	// Create stores a new feature annotation
	Create(annotation *feature.FeatureAnnotation) error

	// GetByID retrieves a feature annotation by its ID
	GetByID(id string) (*feature.FeatureAnnotation, error)

	// GetByName retrieves a feature annotation by its name
	GetByName(name string) (*feature.FeatureAnnotation, error)

	// Update modifies an existing feature annotation
	Update(id string, annotation *feature.FeatureAnnotation) error

	// Delete removes a feature annotation (soft delete if purge=false)
	Delete(id string, purge bool) error

	// AddTag adds a tag property to a feature annotation
	AddTag(id string, tag *feature.TagProperty) error

	// AddTags adds multiple tag properties to a feature annotation
	AddTags(id string, tags []*feature.TagProperty) error

	// SetTags replaces all existing tags with the provided tags (idempotent full-update)
	SetTags(id string, tags []*feature.TagProperty) error

	// UpdateTag modifies an existing tag in a feature annotation
	UpdateTag(id string, tagName string, tag *feature.TagProperty) error

	// RemoveTag removes a tag from a feature annotation
	RemoveTag(id string, tagName string) error

	// RemoveTags removes a tag with specific tag name and value from a feature annotation
	RemoveTags(id string, tag string, value string) error

	// ListByPubmedID retrieves feature annotations by PubMed ID
	ListByPubmedID(pubmedID string) ([]*feature.FeatureAnnotation, error)

	// ListByDOI retrieves feature annotations by DOI
	ListByDOI(doi string) ([]*feature.FeatureAnnotation, error)
}

FeatureAnnotationStorage defines the interface for feature annotation storage operations

func NewLevelDBStorage 

func NewLevelDBStorage(
	logger *logrus.Logger,
) (FeatureAnnotationStorage, error)

type LevelDBStorage 

type LevelDBStorage struct {
	// contains filtered or unexported fields
}

func (*LevelDBStorage) AddTag 

func (s *LevelDBStorage) AddTag(id string, tag *feature.TagProperty) error

func (*LevelDBStorage) AddTags 

func (s *LevelDBStorage) AddTags(id string, tags []*feature.TagProperty) error

func (*LevelDBStorage) Close 

func (s *LevelDBStorage) Close() error

func (*LevelDBStorage) Create 

func (s *LevelDBStorage) Create(annotation *feature.FeatureAnnotation) error

func (*LevelDBStorage) Delete 

func (s *LevelDBStorage) Delete(id string, purge bool) error

func (*LevelDBStorage) GetByID 

func (s *LevelDBStorage) GetByID(
	id string,
) (*feature.FeatureAnnotation, error)

func (*LevelDBStorage) GetByName 

func (s *LevelDBStorage) GetByName(
	name string,
) (*feature.FeatureAnnotation, error)

func (*LevelDBStorage) ListByDOI 

func (s *LevelDBStorage) ListByDOI(
	doi string,
) ([]*feature.FeatureAnnotation, error)

func (*LevelDBStorage) ListByPubmedID 

func (s *LevelDBStorage) ListByPubmedID(
	pubmedID string,
) ([]*feature.FeatureAnnotation, error)

func (*LevelDBStorage) RemoveTag 

func (s *LevelDBStorage) RemoveTag(id string, tagName string) error

func (*LevelDBStorage) RemoveTags 

func (s *LevelDBStorage) RemoveTags(id string, tag string, value string) error

RemoveTags removes a tag with specific tag name and value from a feature annotation.

func (*LevelDBStorage) SetTags 

func (s *LevelDBStorage) SetTags(id string, tags []*feature.TagProperty) error

func (*LevelDBStorage) Update 

func (s *LevelDBStorage) Update(
	id string,
	annotation *feature.FeatureAnnotation,
) error

func (*LevelDBStorage) UpdateTag 

func (s *LevelDBStorage) UpdateTag(
	id string,
	tagName string,
	tag *feature.TagProperty,
) error

type MemoryStorage 

type MemoryStorage struct {
	// contains filtered or unexported fields
}

MemoryStorage implements FeatureAnnotationStorage using in-memory maps

func NewMemoryStorage 

func NewMemoryStorage(logger *logrus.Logger) *MemoryStorage

NewMemoryStorage creates a new in-memory storage instance

func (*MemoryStorage) AddTag 

func (m *MemoryStorage) AddTag(id string, tag *feature.TagProperty) error

AddTag adds a tag property to a feature annotation

func (*MemoryStorage) AddTags 

func (m *MemoryStorage) AddTags(id string, tags []*feature.TagProperty) error

AddTags adds multiple tag properties to a feature annotation

func (*MemoryStorage) Create 

func (m *MemoryStorage) Create(annotation *feature.FeatureAnnotation) error

Create stores a new feature annotation

func (*MemoryStorage) Delete 

func (m *MemoryStorage) Delete(id string, purge bool) error

Delete removes a feature annotation

func (*MemoryStorage) GetByID 

func (m *MemoryStorage) GetByID(id string) (*feature.FeatureAnnotation, error)

GetByID retrieves a feature annotation by its ID

func (*MemoryStorage) GetByName 

func (m *MemoryStorage) GetByName(
	name string,
) (*feature.FeatureAnnotation, error)

GetByName retrieves a feature annotation by its name

func (*MemoryStorage) ListByDOI 

func (m *MemoryStorage) ListByDOI(
	doi string,
) ([]*feature.FeatureAnnotation, error)

ListByDOI retrieves feature annotations by DOI

func (*MemoryStorage) ListByPubmedID 

func (m *MemoryStorage) ListByPubmedID(
	pubmedID string,
) ([]*feature.FeatureAnnotation, error)

ListByPubmedID retrieves feature annotations by PubMed ID

func (*MemoryStorage) RemoveTag 

func (m *MemoryStorage) RemoveTag(id string, tagName string) error

RemoveTag removes a tag from a feature annotation

func (*MemoryStorage) RemoveTags 

func (m *MemoryStorage) RemoveTags(id string, tag string, value string) error

RemoveTags removes a tag with specific tag name and value from a feature annotation

func (*MemoryStorage) SetTags 

func (m *MemoryStorage) SetTags(id string, tags []*feature.TagProperty) error

SetTags replaces all existing tags with the provided tags (idempotent full-update)

func (*MemoryStorage) Update 

func (m *MemoryStorage) Update(
	id string,
	annotation *feature.FeatureAnnotation,
) error

Update modifies an existing feature annotation

func (*MemoryStorage) UpdateTag 

func (m *MemoryStorage) UpdateTag(
	id string,
	tagName string,
	tag *feature.TagProperty,
) error

UpdateTag modifies an existing tag in a feature annotation

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