README
¶
mbdr
mbdr is a utility for querying and parsing binary mcell reaction data output files
Directories
¶
| Path | Synopsis |
|---|---|
|
cmd
|
|
|
frogAnalyzer
frogAnalyzer determines vesicle release events and latencies for our frog NMJ model according to the original excess-calcium-binding-site model (Dittrich et al., Biophys.
|
frogAnalyzer determines vesicle release events and latencies for our frog NMJ model according to the original excess-calcium-binding-site model (Dittrich et al., Biophys. |
|
frogAnalyzerY
frogAnalyzer determines vesicle release events and latencies for our frog NMJ model according to the second sensor facilitation model (see Ma et al., J. Neurophys, 2014)
|
frogAnalyzer determines vesicle release events and latencies for our frog NMJ model according to the second sensor facilitation model (see Ma et al., J. Neurophys, 2014) |
|
mouseAnalyzer
mouseAnalyzer determines vesicle release events and latencies for our mouse NMJ 6 AZ model with two synaptic vesicles each according to the the original excess-calcium-binding-site model (Dittrich et al., Biophys.
|
mouseAnalyzer determines vesicle release events and latencies for our mouse NMJ 6 AZ model with two synaptic vesicles each according to the the original excess-calcium-binding-site model (Dittrich et al., Biophys. |
|
mouseAnalyzerY
mouseAnalyzer determines vesicle release events and latencies for our mouse NMJ 6 AZ model with two synaptic vesicles each according to the second sensor faciliation model (see Ma et al., J. Neurophys, 2014)
|
mouseAnalyzer determines vesicle release events and latencies for our mouse NMJ 6 AZ model with two synaptic vesicles each according to the second sensor faciliation model (see Ma et al., J. Neurophys, 2014) |
|
Package libmbd contains data structures and helper routines for extracting reaction data from binary mcell reaction data output files
|
Package libmbd contains data structures and helper routines for extracting reaction data from binary mcell reaction data output files |
|
Package parser is a wrapper around the main parsing routines.
|
Package parser is a wrapper around the main parsing routines. |
|
parseAPI1
Package parseAPI1 contains the infrastructure for parsing MCell binary reaction data output that was written according to API version MCELL_BINARY_API_1.
|
Package parseAPI1 contains the infrastructure for parsing MCell binary reaction data output that was written according to API version MCELL_BINARY_API_1. |
|
parseAPI2
Package parseAPI2 contains the infrastructure for parsing MCell binary reaction data output that was written according to API version MCELL_BINARY_API_2.
|
Package parseAPI2 contains the infrastructure for parsing MCell binary reaction data output that was written according to API version MCELL_BINARY_API_2. |
|
util
Package util contains low lever helper function for parsing byte buffers
|
Package util contains low lever helper function for parsing byte buffers |
|
Package releaser determines vesicle release events and latencies for our from and mouse NMJ AZ models.
|
Package releaser determines vesicle release events and latencies for our from and mouse NMJ AZ models. |
|
Version provides the version tag for all the mbdr tools
|
Version provides the version tag for all the mbdr tools |
Click to show internal directories.
Click to hide internal directories.